Iwase SC, Miyazato P, Katsuya H, Islam S, Tan B, Ito J, Matsuo M, Takeuchi H, Ishida T, Matsuda K, Maeda K, and Satou Y. HIV-1 DNA-capture-seq is a useful tool for the comprehensive characterization of HIV-1 provirus. Sci Rep, 9(1):12326, 2019（Division of Genomics and Transcriptomics）
Category: Publications(EN)
Expression of IL-34 correlates with macrophage infiltration and prognosis of diffuse large B-cell lymphoma. (Clinical & Translational Immunology)
Noyori O, Komohara Y, Nasser H, Hiyoshi M, Ma C, Pan C, Carreras J, Nakamura N, Sato A, Ando K, Okuno Y, Nosaka K, Matsuoka M, Suzu S. Expression of IL-34 correlates with macrophage infiltration and prognosis of diffuse large B-cell lymphoma. Clinical & Translational Immunology 8 (8): e1074, 2019.（Division of Infection and Hematopoiesis）
Pre-treatment and acquired HIV drug resistance in Dar es Salaam, Tanzania in the era of tenofovir and routine viral load monitoring
G Barabona, M Mahiti, S Masoud, P Mbelele, A Shaban Mgunya, L Minja, B Sunguya, U Shigemi, M Matsuda, A Hachiya, Y Iwatani, E Lyamuya, T Ueno (2019) Pre-treatment and acquired HIV drug resistance in Dar es Salaam, Tanzania in the era of tenofovir and routine viral load monitoring. J Antimicrob Chemother https://doi.org/10.1093/jac/dkz272（Division of Infection and Immunity）
Identification of immunodominant HIV-1 epitopes presented by HLA-C*12:02, a protective allele, using an immunopeptidomics approach (J. Virol)
Takayuki Chikata, Wayne Paes, Tomohiro Akahoshi, Thomas Partridge, Hayato Murakoshi, Hiroyuki Gatanaga, Nicola Ternette, Shinichi Oka, Persephone Borrow, and Masafumi Takiguchi, Identification of immunodominant HIV-1 epitopes presented by HLA-C*12:02, a protective allele, using an immunopeptidomics approach, J. Virol, 93(17), e00634-19,2019
（Division of International Collaboration Research / Takiguchi Lab)
Updated publications.
Ueno M, Nogawa M, Siddiqui R, Watashi K, Wakita T, Kato N, Ikeda M, Okimura T, Isaka S, Oda T, Ariumi Y. Acidic polysaccharides isolated from marine algae inhibit the early step of viral infection. Int. J. Biol. Macromol. 124:282-290, 2019.（Division of Retroelement）
Smita Kulkarni, Alexandra Lied, Viraj Kulkarni, Marijana Rucevic, Maureen P. Martin, Victoria Walker-Sperling, Stephen K. Anderson, Rodger Ewy, Sukhvinder Singh, Hoang Nguyen, Paul J. McLaren, Mathias Viard, Vivek Naranbhai, Chengcheng Zou, Zhansong Lin, Hiroyuki Gatanaga, Shinichi Oka, Masafumi Takiguchi, Chloe L. Thio, Joseph Margolick, Gregory D. Kirk, James J. Goedert, W. Keith Hoots, Steven G. Deeks, David W. Haas, Nelson Michael, Bruce Walker, Sylvie Le Gall, Fatema Z. Chowdhury, Xu G. Yu and Mary Carrington, CCR5AS lncRNA variation differentially regulates CCR5, influencing HIV disease outcome, Nat Immunol. 20:824-834, 2019（Division of International Collaboration Research / Takiguchi Lab)
Nozomi Kuse, Xiaoming Sun, Tomohiro Akahoshi, Anna Lissina, Takuya Yamamoto, Victor Appay, and Masafumi Takiguchi, Priming of HIV-1-specific CD8+ T cells with strong functional properties from naive T cells, EBioMedicine 42:109-119, 2019（Division of International Collaboration Research / Takiguchi Lab)
Chengcheng Zou*, Hayato Murakoshi*, Nozomi Kuse, Tomohiro Akahoshi, Takayuki Chikata, Hiroyuki Gatanaga, Shinichi Oka, Tomas Hanke, and Masafumi Takiguchi (*Equal contribution), Effective suppression of HIV-1 replication by CTLs specific for Pol epitopes in conserved mosaic vaccine immunogens, J. Virol. 93:e02142-18, 2019（Division of International Collaboration Research / Takiguchi Lab)
The 2018 publications are posted.
Katsuya H, Cook LBM, Rowan AG, Satou Y, Taylor G, Bangham CRM. Phosphatidylinositol 3-kinase-δ (PI3K-δ) is a potential therapeutic target in adult T-cell leukemia-lymphoma. Biomark Res, 6:24, 2018（ Divisionof Genomics and Transcriptomics）
Miura M, Miyazato P, Satou Y, Tanaka Y, Bangham CRM. Spontaneous HTLV-1 transcription is accompanied by distinct epigenetic changes in the 5′ and 3′ long terminal repeats. Wellcome Open Research, 3:105, 2018（ Divisionof Genomics and Transcriptomics）
F Mwimanzi, M Toyoda, M Mahiti, J Mann, J Martin, D Bangsberg, M Brockman, P Goulder, F Kirchhoff, Z Brumme, T Ndung’u, T Ueno (2018) Resistance of major histocompatibility complex class B (MHC-B) to Nef-mediated downregulation relative to that of MHC-A is conserved among primate lentiviruses and influences antiviral T cell responses in HIV-1-infected individuals. J Virol 92: e01409-17 https://doi.org/10.1128/JVI.01409-17（Division of Infection and Immunity）
Siddiqui R, Suzu S, Ueno M, Nasser H, Koba R, Bhuyan F, Noyori O, Yasuda-Inoue M, Hishiki T, Sukegawa S, Miyagi E, Strebel K, Matsushita S, Shimotohno K, Ariumi Y. Apolipoprotein E is an HIV-1-inducible inhibitor of viral production and infectivity in macrophages. PLoS Pathog. 14:e1007372, 2018.（Division of Retroelement）
Kawano K, Doucet A, Ueno M, Kuroki M, Turelli P, An W, Cristofari G, Trono D, Ariumi Y. HIV-1 Vpr and p21Waf1 restrict the LINE-1 mobility. Nucleic Acid Res. 46:8454-8470, 2018 （Division of Retroelement）
Ariumi Y, Kawano K, Yasuda-Inoue M, Fukuda H, Siddiqui R, Turelli P, Tateishi S. DNA repair protein Rad18 restricts LINE-1 mobility. Sci Rep. 8:15894. 2018.（Division of Retroelement）
Hayato Murakoshi, Madoka Koyanagi, Tomohiro Akahoshi, Takayuki Chikata, Nozomi Kuse, Hiroyuki Gatanaga, Sarah L Rowland-Jones, Shinichi Oka, and Masafumi Takiguchi, Impact of a Single HLA-A*24:02-associated Escape Mutation on the Detrimental Effect of HLA-B*35:01 in HIV-1 Control, EBioMedicine 36:103-112, 2018（Division of International Collaboration Research / Takiguchi Lab)
Takayuki Chikata*, Giang Van Tran*, Hayato Murakoshi, Tomohiro Akahoshi, Ying Qi, Vivek Naranbhai, Nozomi Kuse, Yoshiko Tamura, Madoka Koyanagi, Sachiko Sakai, Dung Hoai Nguyen, Dung Thi Nguyen, Ha Thu Nguyen, Trung Vu Nguyen, Shinichi Oka, Maureen P. Martin, Mary Carrington, Keiko Sakai, Kinh Van Nguyen, and Masafumi Takiguchi (*Equal contribution), HLA class I-mediated HIV-1 control in Vietnamese infected with HIV-1 subtype A/E, J. Virol. 92:e01749-17, 2018（Division of International Collaboration Research / Takiguchi Lab)
The 2017 publications are posted.
Satou Y#*, Katsuya H#, Fukuda A, Misawa N, Miyazato P, Islam MS, Fassati A, Melamed A, Bangham CRM, Koyanagi Y, Sato K. Dynamics and mechanisms of clonal expansion of HIV-1-infected cells in a humanized mouse model. (#equal contribution, *corresponding author) Sci Rep, 7: 6913, 2017 （Division of Genomics and Transcriptomics）
Takayuki Chikata*, Hayato Murakoshi*, Madoka Koyanagi, Kazutaka Honda, Hiroyuki Gatanaga, Shinichi Oka, and Masafumi Takiguchi (*Equal contribution), Control of HIV-1 by an HLA-B*52:01-C*12:02 protective haplotype, J. Infect. Dis. 216:1415-1424, 2017 （Division of International Collaboration Research / Takiguchi Lab)
Hayato Murakoshi*, Madoka Koyanagi*, Takayuki Chikata, Mohammad Arif Rahman, Nozomi Kuse, Keiko Sakai, Hiroyuki Gatanaga, Shinichi Oka, and Masafumi Takiguchi (*Equal contribution), Accumulation of Pol mutations selected by HLA-B*52:01-C*12:02 protective haplotype-restricted CTLs causes low plasma viral load due to low viral fitness of mutant viruses, J. Virol. 91:e02082-16, 2017 （Division of International Collaboration Research / Takiguchi Lab)
The 2016 publications are posted.
Miyazato P, Katsuya H, Fukuda A, Uchiyama Y, Matsuo M, Tokunaga M, Hino S, Nakao M, and Satou Y*. Application of targeted enrichment to next-generation sequencing of retroviruses integrated into the host human genome. Sci Rep, 6:28324, 2016（Division of Genomics and Transcriptomics）
Satou Y*, Miyazato P, Ishihara K, Yaguchi H, Melamed A, Miura M, Fukuda A, Nosaka K, Watanabe T, Rowan A, Nakao M, and Bangham CRM*. The retrovirus HTLV-1 inserts an ectopic CTCF-binding site into the human genome. PNAS 113: 3054-59, 2016（Division of Genomics and Transcriptomics）
Zhansong Lin, Kimiko Kuroki, Nozomi Kuse, Xiaoming Sun, Tomohiro Akahoshi, Ying Qi, Takayuki Chikata, Takuya Naruto, Madoka Koyanagi, Hayato Murakoshi, Hiroyuki Gatanaga, Shinichi Oka, Mary Carrington, Katsumi Maenaka, Masafumi Takiguchi, HIV-1 control by NK cells via reduced interaction between KIR2DL2 and HLA-C*12:02/C*14:03, Cell Reports 17:2210-2220, 2016（Division of International Collaboration Research / Takiguchi Lab)
Xiaoming Sun, Yi Shi, Tomohiro Akahoshi, Mamoru Fujiwara, Hiroyuki Gatanaga, Christian Schonbach, Nozomi Kuse, Victor Appay, George F. Gao, Shinichi Oka, and Masafumi Takiguchi, Effects of a single escape mutation on T cell and HIV-1 co-adaptation, Cell Reports, 15:2279-2291, 2016（Division of International Collaboration Research / Takiguchi Lab)
Giang Van Tran*, Takayuki Chikata*, Jonathan M. Carson, Hayato Murakoshi, Dung Hoai Nguyen, Yoshiko Tamura, Tomohiro Akahoshi, Nozomi Kuse, Keiko Sakai, Sachiko Sakai, Kyle Cobarrubias, Shinichi Oka, Zabrina L. Brumme, Kinh Van Nguyen, and Masafumi Takiguchi (*Equal contribution), A strong association of HLA-associated Pol and Gag mutations with clinical parameters in HIV-1 subtype A/E infection, AIDS 30:681-689, 2016（Division of International Collaboration Research / Takiguchi Lab)
The 2015 publications are posted.
Nozomi Kuse*, Mohammad Arif Rahman*, Hayato Murakoshi*, Giang Van Tran, Takayuki Chikata, Madoka Koyanagi, Kinh Van Nguyen, Hiroyuki Gatanaga, Shinichi Oka, and Masafumi Takiguchi, Different Effects of Nonnucleoside Reverse Transcriptase Inhibitor Resistance Mutations on Cytotoxic T Lymphocyte Recognition between HIV-1 Subtype B and Subtype A/E Infections (*Equal contribution). J. Virol. 89:7363-7372, 2015（Division of International Collaboration Research / Takiguchi Lab)
Giang Van Tran*, Takayuki Chikata*, Jonathan M. Carson, Hayato Murakoshi, Dung Hoai Nguyen, Yoshiko Tamura, Tomohiro Akahoshi, Nozomi Kuse, Keiko Sakai, Sachiko Sakai, Kyle Cobarrubias, Shinichi Oka, Zabrina L. Brumme, Kinh Van Nguyen, and Masafumi Takiguchi (*Equal contribution), A strong association of HLA-associated Pol and Gag mutations with clinical parameters in HIV-1 subtype A/E infection, AIDS 30:681-689, 2016（Division of International Collaboration Research / Takiguchi Lab)
